PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00386g00415.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 1108aa    MW: 124164 Da    PI: 9.1409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00386g00415.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.91e-0767100338
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                                W++e+  ++++a +++G++ Wk++a+ +   Rt+ 
  Peaxi162Scf00386g00415.1  67 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTAD 100
                               7*****************99.******998.78875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-963111IPR009057Homeodomain-like
SMARTSM007174.7E-464112IPR001005SANT/Myb domain
CDDcd001672.39E-567102No hitNo description
PfamPF002491.8E-667102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-467103IPR009057Homeodomain-like
PfamPF065849.6E-33654754IPR033471DIRP domain
SMARTSM011353.8E-57654755IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
LTLCLPDSAF CYRFPKILSM APAKKSRSVN KRFSPTTDIS PSKDGNGDSS KKSLQRKRKL  60
SDMLGSEWSE EDLTRFYQAY RKYGKDWKKV AAAVKPRTAD MVEALYTMNR AYLSLPEGTA  120
SVVGLIAMMT DHYCNLAASD SEQESNEDAG TSRKPQKRAR GKVQPNISRT SEMASPTLAA  180
SNGCLTFLKK KRSGGSRPRA VGKRTPRFPV SFSYENPRSE KYFAPSRQSL KQQEDDTDDD  240
VKIALVLTEA SQRGGSPQVS HTPNRRTDSA MSSPVGTGER KRVKKHVDYA KLLSNEVDEE  300
EGSMEADTGE LSRYKNDLEE TGAAGRTTQK GRRLYGKKVE VDDSSDNHFD DIKEACSGTE  360
EGQRLGVVRG KLDMEATDEK NSRTSLQGTR KRSKKVLFRR DEGSAFDALQ TLADLSLMMP  420
TAENEDEAMI QVKDEIDDHV DESGSLEAVR ANRQRDKRGS AGVRSRWSQP LSKFEVASSS  480
TLKHGKVTST DVSAFPEPKQ VRRTQKTMSS KTRKTEGHIN NDVTESQEAE PKEALKKSTN  540
KGKRSSQSAS PKLIKDQEHS SCGDPRTERS DSAQSTAEIP VANQVNLPTK VRSRRKMDLE  600
KPQRQKDLKI SDKSLDDTSA YISALHDRTF SPKKKISNCL SNRHVRRRCT YEWFYSAIDY  660
PWFAKREFVE YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSEQFLNEEK EKLNQYRESV  720
RTHYTELREG TREGLPTDLA RPLSVGQRVI AIHPKTREIH DGSVLTVDHS RCRVQFDRPE  780
LGVEFVMDID CMPLNPYENM PTLLTRHADT VDKFFESFNE QKVKALANEY IKFPAGDMDN  840
GDVCFSPPSH SISNLLKQTK VASAEADMQS KSGVMGTATY QQKAYTKPSV VVQIQAKEAD  900
VQALADLTRA LDKKVSSALL RLRQRNTYTG SIPLPWPRPV PNLADPSTLS TVDHCTSQPH  960
ESGFLVNEII ESSKIKARTM VDAAVQAMLS LTSRDNTTEK IEEAIDYVND RIPLDDSCMP  1020
TPPDPKSKTM SDRNETEIPS ELITKCVATL LMIQKCTERQ FPPADMAKVL DSAVASLQPC  1080
CSQNFPVYAE IQKCMGIIRN QILALIPT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-115HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595580.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
RefseqXP_009595581.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLK4AX040.0K4AX04_SOLLC; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding